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Why Is Methylation Important Anyway? Gene Regulation.

MTHFR is the rate-limiting enzyme in the methylation cycle, so the whole cycle turns into a bottle-neck at this point very easily. The methylation cycle is something we’ll talk about in greater detail later on because methylation matters. At its most basic it converts homocysteine, which is inflammatory, into methionine and ultimately SAMe. SAMe is the universal methyl donor and is necessary for almost all methylation reactions.

One simple way to illustrate the importance of methylation is to talk about gene expression. The processes in your body are essentially run by your genes. In order to turn on or off certain genes, they must be methylated. If we’re talking about the gene function of apoptosis or programmed cell death, then you really want it to be working when it should be.

Apoptosis is one of the ways your body protects itself from damage. When the gene is on (or unmethylated), the cell will self-destruct if it gets damaged. That is a good thing. If it is off (or methylated), then the cell will continue to replicate out of control even when it’s damaged. We have a word for that – it’s cancer. This could be one reason why MTHFR polymorphisms have been linked to so many different types of cancer – because your body just can’t methylate or unmethylate properly.

It is important to understand why methylation is so important. It is important to understand how genes are expressed
A methylated gene is inactive, while an unmethylated gene is active.

Outside of the methylation of genes, you also have to methylate some toxins in order to eliminate them, which means people with MTHFR mutations have differences in the way they process things like alcohol, formaldehyde, certain pharmaceutical drugs, hormones, and many other things. Methylation is also crucial when you’re building neurotransmitters like serotonin, dopamine, epinephrine, and norepinephrine.

Perhaps now it is easier to see why the internet is abuzz with news of MTHFR. A lot of this information is incredibly beneficial and helpful and accurate and some of it is a little bit crazy-making. The echo chamber of the internet does tend to amplify noise.

Why is Methylation Important? Methylation Matters For…

  • Gene Expression
  • Toxin Elimination
  • Hormone Balance (because hormones get detoxed too)
  • Neurotransmitter Formation.

That pretty much sums up why MTHFR matters so much and why methylation is important – because those four things, combined with nutrition, are literally the foundations of a healthy human. We’ll talk about the last three in seperate topics, but today I want to focus on gene expression.

What IS Methylation? Really?

Methylation is so anti-climactic when you really get down to the nitty-gritty. It’s the addition of a methyl group to whatever you’re methylating. That begs the question what is a methyl group?

Why is methylation important? It is the addition of a methyl group that helps with neurotransmitters, detox, gene expression and hormone balance.
The Demented, three-eared Mickey Mouse of Methylation

Um… What Am I Looking AT?

Outside of a mutant mouse head, it’s actually the chemical structure of a methyl group. One big carbon and three hydrogens bonded to it. This methyl group is the functional part of 5, L-methyltetrahydrofolate, or 5, L-MTHF, which is the valuable thing that you get out of the magic chair after the less valuable thing (folic acid) sits down. If this is all gibberish right now, read this post here or listen to the podcast from the beginning.

The mutant mouse, with labels. It’s mutant Mickey for us mutants.

If you’d like a fancier, more chemistry-looking version, it’s here. This is the entire molecule of 5, L-methyltetrahydrofolate, courtesy of PubChem, with the methyl group circled.

There are a number of reasons why methylation is so important and it is important to understand why. In order to understand how genes are expressed, it is crucial that we understand how they work

The Mutant Mouse Head is Causing All This Fuss?


If you picture your body like a vast, complex lego structure that moves little lego pieces around to get things done, then the mutant mouse head methyl group is one of the foundational pieces that moves around all over the place. It’s a simple on/off switch for genes, but as it happens, being able to turn genes on and off is crucial.

Why Do We Need To Turn Genes On And Off?

We have the tendency to think of our genes like a recipe out of a recipe book. The directions to follow to build (or maybe to bake) a human. This is both accurate and not complete. Your genes are the recipe to build you, but they’re filled with stretches of information that has come from outside of you, like from viruses, or information that isn’t directly used to build anything. There are also lots of bits that we don’t fully understand.

45% of your genome is composed of transposable or viral DNA. Transposable elements are called “jumping genes” and are not fully understood. They do contribute to mutations as well as a number of diseases including hemophilia, severe combined immunodeficiency, porphyria, muscular dystrophy, and Alzheimer’s disease. Viral DNA is literally leftover from viruses, and so methylating these elements well allows your body to silence them. If you aren’t methylating properly, then these genes can start to express, causing genetic errors, and potentially disease.

Some of the most critical DNA methylation happened during embryonic development, well before you were born. There is also ongoing methylation that happens as cells divide and it is especially relevant within brain cells. We don’t know a lot about it, but we do know this:

  • Methylation within brain cells can be altered by drugs like cocaine, stress, and seizures.
  • Childhood stress or abuse has a carry-over to the way adult brains methylate their DNA
  • DNA methylation changes are associated with, among other things, major psychosis.
  • Altered DNA methylation in the brain is linked to psychiatric disorders including schizophrenia and bipolar disorder.
  • DNA methylation is especially crucial when you’re making babies. Human eggs, sperm, and ultimately the embryos that they produce are all new cells, meaning that lots of DNA needs to reproduce (and methylate) for this to work out.

Can We Actually Impact This By Optimizing Methylation?

According to sperm studies, we can. Sperm seems like a bit of a random thing to analyze, but the fact is; men make sperm fresh daily. It’s a great way to measure current activity vs. what happened during growth and development.

This study, published in Human Molecular Genetics, of infertile men with a variety of MTHFR statuses (wild type, homozygous or heterozygous for C677T polymorphisms) shows high-dose folic acid changes sperm DNA methylation across the genome.

This study provides evidence that high-dose folic acid supplementation leads to genome-wide alterations in sperm DNA methylation…Homozygosity for the MTHFR C677T polymorphism was demonstrated as a factor that can modify the response to high-dose folic acid supplementation.

Aarabi M, San Gabriel MC, Chan D, et al. High-dose folic acid supplementation alters the human sperm methylome and is influenced by the MTHFR C677T polymorphism. Hum Mol Genet. 2015;24(22):6301-6313. doi:10.1093/hmg/ddv338

While I’d love to see the same study repeated with a more bioavailable form of folate than folic acid, this is still great data. I take it to mean that we can influence the methylation of our DNA by optimizing our methylation cycles. That is a really big deal.

Next week we’ll talk about methylation and detoxification because when we’re talking about optimizing methylation, you have to understand why “detoxing” and also toxin avoidance are so important for MTHFR mutants.

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MTHFR is a common genetic mutation that can contribute to anxiety, depression, fatigue, chronic pain, infertility, and more serious conditions like breast implant illness, heart attack, stroke, chronic fatigue syndrome, and some types of cancer. If you know or suspect you have an MTHFR variant, schedule a free 15-minute meet-and-greet appointment with MTHFR expert Dr. Amy today.

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Amy Neuzil
Amy Neuzil

Dr. Amy Neuzil, N.D. is a leading expert in MTHFR and epigenetics, and she is passionate about helping people achieve optimal health and wellness for their genetic picture. She has helped thousands of people overcome health challenges using a simple, step-by-step approach that starts with where they are today. Dr. Neuzil's unique approach to wellness has helped countless people improve their energy levels, lose weight, and feel better mentally and emotionally. If you're looking for a way to feel your best, Dr. Amy Neuzil can help. Contact her today to learn more about how she can help you achieve optimal health and wellness.

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